UPDATE: FIXED

So I've been working on a new craft and I noticed that data shown in the editor does not match data in the XML file.

For example, this part has the position of (-0.125,3.725454,-2.625) in the editor:

http://i.imgur.com/EREDdX8.png

However, when I open the XML file, it says a totally different location of (0,0,0):

http://i.imgur.com/AeTDqNC.png

It hasn't been a big deal until now, it has brought my new project to a standstill and I have no idea the cause or how to fix it.

Has anybody else seen this? I know they are the same saves and same part, if anyone knows the solution it would be greatly appreciated :)