Most of the mods seem to be working fine, but some are a bit Wampus.

Any mods the used multiple images to create a large effect have problems.
Now you can see a black void around each image.
Trees with collision models on mod maps are now invisible although the collision models are still there.
Any parts that have a visual part without any connections or collision might be invisible.This actually helped the glass mod by making it clear.But the coloured glasses are completely opaque.

These are all the problems I found.Test as many mods as you can and make a list of all the problems.